Abstract: Analyzing the data deluge generated by next generation sequencing technologies is a challenging task. Variant calling aids in characterizing phenotype of an organism. The objective of this ...
Our VCF to BCF Converter is a web-based tool that converts text-based Variant Call Format (VCF) files to Binary Variant Call Format (BCF), a compact, indexed representation that retains all essential ...
$ cat repro.vcf ##fileformat=VCFv4.3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##contig=<ID=chr20> ##reference=hg38 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT repro chr20 ...
I was trying to split the multiallelic variants using bcftools norm but I keep on getting an error. I got the VCF from here and subset it for region Pf3D7_03_v3 ...
Genetic variation is a key contributor to health and disease. Understanding the link between an individual’s genotype and the corresponding phenotype is a major goal of medical genetics. Whole genome ...
Eutrema salsugineum has long been used as the model for examining salt and other abiotic stress in plants. In addition to the forward genetics approaches widely used in the lab, natural variations ...
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